#NumericalCARBONATE KnowledgeBase			7 Sep 2010 CJJ			
						
"#Chris Jenkins INSTAAR, Donald Potts UCSC Sep 2010"						
					SI	
"#This KnowledgeBase should be limited to taxa which are: abundant, dominant, ubiquitous, well-documented and functionally important."						
#Preferably it should be species-specific. Then a species can be used as an indicator in the final results.						
#The references on which it is based should be given per line of data. General references can be included at the creature line or in a # line.						
						
						
#Parameters	Values	Units	Data Details	Parameter Details	References	
						
		Standard; Non-standard		Standard; Non-standard		
						
						
Creature=	Phormidium_crosbyanum	0	Heterotrophic carbonate-producing Bacteria		Pringaul++; http://jsedres.geoscienceworld.org/cgi/reprint/74/4/462	
.Alternatives						
.Colony.Size	av=20;mx=90	mm		linear size	http://jsedres.geoscienceworld.org/cgi/reprint/48/3/751.pdf	
.Colony.Capacity	5	%	pat area per metre; from_photos	Observed areal coverages	http://jsedres.geoscienceworld.org/cgi/reprint/48/3/751.pdf	
.Colony.Frame.Fraction	90	%		Areal proportion of colony arms (view vertically)	CJJ	
.Colony.GrowthRate	mx=1*0.0001	mm/day		linear extension	http://jsedres.geoscienceworld.org/cgi/reprint/48/3/751.pdf	
.Colony.Morphology	aggregated; globular	$		Descriptive	CJJ	
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	100	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	5	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	mn=150;mx=6000	microns	mx=150x(2000>>6000)	Clast/grain size after death/transport/burial	Gautret et al. 74 (4): 462. (2004) ; http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755761/ (Beggiatoa )	
.Enviro.Limits		$		Limitations on growth/fecundity/survival		
.Enviro.Prefs	aerobic; marine; inter skeletal spaces	$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	"[300,50;1300,50]"	"[umol photons/m2/s1,%]"		"[EnviroParam, Fitness] LineSet"		
.Enviro.Prefs.salin	"[35.8,50;36.4]"	"[psu,%]"		"[EnviroParam, Fitness] LineSet"	Gautret et al. 74 (4): 462. (2004)	
.Enviro.Prefs.nutr		"[ppm,%]"		"[EnviroParam, Fitness] LineSet"		
.Enviro.Prefs.temp	"[25,0;26,50;32,50;33,0]"	"[degC,%]"		"[EnviroParam, Fitness] LineSet"	Gautret et al. 74 (4): 462. (2004)	
.Enviro.Prefs.wd	"[0,50;13,50;19,20;25,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"		
.Mortality.Longevity	2	yr			http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755761/ (Beggiatoa )	
.Mortality.Rate		%				
.Mortality.Type	autotoxins(H2S;NH4)	$		"Causes of mortality even in optimum conditions (e.g predation, dieback)"	http://www.brgm.fr/brgm//biofilms-rnb/fichier/actes/theme%201/1_Rutger_de_Wit.pdf	
.Repro.Clone.ProductionRate				Clones produced per adult per year under normal conditions		
.Repro.Clone.SuccessRate	av=2*0.0001	#/day	ie 24hr/doubling	"Successful formation of colonies from clones (e.g., unattached colonies)"	http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755761/ (Beggiatoa )	
.Repro.Clone.Type	fragmentation; binary fission; 	$				
.Repro.Spawn.ProductionRate	0			"Spawn (eggs,larvae) produced per adult per year"	cjj	
.Repro.Spawn.SuccessRate	0	#/m2		Propagules surviving to grow; /m2 instantaneously	cjj	
.Repro.Spawn.Type	budding; motile hormogonia; continuous	$		The process of reproduction	CJJ	
						
Creature=	Porites lutea	1	Scleractinian coral; massive			
.Alternatives						
.Colony.Size	av=1.8; mx=9.0	m		linear size	http://www.arkive.org/stony-coral/porites-lutea/#text=Description	
.Colony.Capacity	1	#/m2	as big as a metre !	Observed areal coverages	cjj	
.Colony.Frame.Fraction	90	%		Areal proportion of colony arms (view vertically)		
.Colony.GrowthRate	9	mm/yr		linear extension		
.Colony.Morphology	attached(surface); globose	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	mx=100;mn=20	%	20% ones - dead centres 	Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	100	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	av=1.8; mx=9.0			Clast/grain size after death/transport/burial	See colony size	
.Enviro.Limits	excess nutrients	$		Limitations on growth/fecundity/survival		
.Enviro.Prefs	sediment tolerant by mucus	$		Preferences for growth/fecundity/survival	http://www.arkive.org/stony-coral/porites-lutea/#text=Biology	
.Enviro.Prefs.irrad	bright	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr	oligotrophic	$		word	cjj	
.Enviro.Prefs.temp	warm	$		word	cjj	
.Enviro.Prefs.wd	"[0,5; 12,8; 13,100; 20,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"	"Highsmith 2003; Journal of Experimental Marine Biology and Ecology Volume 47, Issue 1, 1980, Pages 55-67 "	
.Mortality.Longevity	mx=1000	yr			http://www.arkive.org/stony-coral/porites-lutea/#text=Description	
.Mortality.Rate	mn=9;mx=13.6	%/yr			http://ajol.info/index.php/wiojms/article/viewFile/28434/22082	
.Mortality.Type	"bleaching, crown-of-thorns"	$		"Causes of mortality even in optimum conditions (e.g predation, dieback)"		
.Repro.Clone.ProductionRate	5	%/yr	value by cjj; process by Highsmith1982	Clones produced per adult per year under normal conditions	Highsmith1982	
.Repro.Clone.SuccessRate	14.8	%	value by Loya 1975; process by Highsmith1983	"Successful formation of colonies from clones (e.g., unattached colonies)"	Highsmith1983; Loya 1975	
.Repro.Clone.Type	fragmentation along dead or bored divisions of colonies	$			Highsmith1984	
.Repro.Spawn.ProductionRate	1	#/adult	Successful long-term offspring	"Spawn (eggs,larvae) produced per adult per year"		
.Repro.Spawn.SuccessRate	mn=13;mx=54	#/m2/yr	On 1.2x1.2m plates; 3 mo collection		http://www.aoml.noaa.gov/general/lib/CREWS/Cleo/St.%20Croix/salt_river77.pdf (diverse corals)	
.Repro.Spawn.Type	sexual; free-swimming gametes; free-swimming larvae; short range dispersal; april nhemi	$		The process of reproduction	http://www.arkive.org/stony-coral/porites-lutea/#text=Biology	
						
Creature=	Acropora palmata	2	Has NO Indo-Pacific Equivalent (DP)		DP	
.Alternatives						
.Colony.Size	30>>50;mx=200	cm		linear size		
.Colony.Capacity	av=0.1;mx=0.37	#/m2		Observed areal coverages	"Baums et al Ecological Monographs, 76(4), 2006, pp. 503?519"	
.Colony.Frame.Fraction	90	%		Areal proportion of colony arms (view vertically)		
.Colony.GrowthRate	1>>2	cm/yr		linear extension		
.Colony.Morphology	attached(surface); tabular branching	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	50	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	10	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	30	cm		Clast/grain size after death/transport/burial		
.Enviro.Limits		$		Limitations on growth/fecundity/survival		
.Enviro.Prefs		$		Preferences for growth/fecundity/survival	http://www.iucnredlist.org/apps/redlist/details/133006/0	
.Enviro.Prefs.irrad	bright	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr	oligotrophic	$		word	cjj	
.Enviro.Prefs.temp	warm	$		word	cjj	
.Enviro.Prefs.wd	"[0.5,0; 3,100; 5.0,10; 22,1; 40,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"		
.Mortality.Longevity	10	yr			http://www.iucnredlist.org/apps/redlist/details/133006/0	
.Mortality.Rate	28	%/yr			http://www.aoml.noaa.gov/general/lib/CREWS/Cleo/PuertoRico/prpdfs/ortiz-population.pdf	
.Mortality.Type	white band disease	$				
.Repro.Clone.ProductionRate	10	#/m2	The m2 area of obsvn was unspecified; I assumed 5m2	Clones produced per adult per year under normal conditions	http://onlinelibrary.wiley.com/doi/10.1111/j.1439-0485.1995.tb00415.x/abstract;In Highsmith 1982 list	
.Repro.Clone.SuccessRate	66	%	% of existing colonies	"Successful formation of colonies from clones (e.g., unattached colonies)"	Highsmith 1981	
.Repro.Clone.Type	"breakage; mechanical, bioerosion small storms"	$			Highsmith 1982	
.Repro.Spawn.ProductionRate	10000			"Spawn (eggs,larvae) produced per adult per year"	cjj	
.Repro.Spawn.SuccessRate	20	#/m2		Propagules surviving to grow; /m2 instantaneously	cjj	
.Repro.Spawn.Type	larval; low numbers; aug boreal; full moon synchrony	$		The process of reproduction; seasonality	http://www.iucnredlist.org/apps/redlist/details/133006/0; http://www.coralscience.org/main/articles/genetics-1/acropora-palmata	
						
Creature=	Acropora cervicornis	3	>> 100 Indo-Pacific equivalents (DP)		TUNNICLIFFE Proc. Natl. Acad. Sci. USA 1981	
.Alternatives						
.Colony.Size	av=30; mx=100	cm		linear size		
.Colony.Capacity	mx=7.1; av=2.9	#/m2		Observed areal coverages		
.Colony.Frame.Fraction	10	%		Areal proportion of colony arms (view vertically)		
.Colony.GrowthRate	12	cm/yr		linear extension		
.Colony.Morphology	ramose; branching			Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	50	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	5	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	0.2x20	cm		Clast/grain size after death/transport/burial	cjj	
.Enviro.Limits		$		Limitations on growth/fecundity/survival		
.Enviro.Prefs	marine; wave action	$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	bright	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr	oligotrophic	$		word	cjj	
.Enviro.Prefs.temp	warm	$		word	cjj	
.Enviro.Prefs.wd	"[0,100; 50,80; 20,80; 30,0; 60,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"		
.Mortality.Longevity		yr				
.Mortality.Rate	mn=4;mx=80	%/yr			http://www.ots.ac.cr/tropiweb/attachments/suppls/sup54-3%20ALMC/10-Quinn-Evaluating.pdf	
.Mortality.Type	disease	$				
.Repro.Clone.ProductionRate	6	%/yr		Clones produced per adult per year under normal conditions		
.Repro.Clone.SuccessRate				"Successful formation of colonies from clones (e.g., unattached colonies)"	cjj	
.Repro.Clone.Type	regenerative; on breakage	$			cjj	
.Repro.Spawn.ProductionRate	mx=70;mn=25	%adults	%colonies;individuals releasing gametes	"Spawn (eggs,larvae) produced per adult per year"	http://coral.aoml.noaa.gov/pipermail/coral-list/2003-July/000056.html	
.Repro.Spawn.SuccessRate	mn=13;mx=54	#/yr	/m2; On 1.2x1.2m plates; 3 mo collection	Propagules surviving to grow; /m2 instantaneously	http://www.aoml.noaa.gov/general/lib/CREWS/Cleo/St.%20Croix/salt_river77.pdf (diverse corals)	
.Repro.Spawn.Type	"larval,limited; vegetative fragmentation; new moon; july to aug boreal"	$		The process of reproduction; seasonality	http://www.iucnredlist.org/apps/redlist/details/133006/0; http://coral.aoml.noaa.gov/pipermail/coral-list/2003-July/000056.html	
						
Creature=	Favia favites	4	Scleractinian coral; massive; (DP) Atlantic equivalent = Montastrea cavernosa?		Riegl and Purkis 2009	
.Alternatives						
.Colony.Size	mx=3	m		linear size		
.Colony.Capacity	mx=20;mn=1	#/m2		Observed areal coverages	http://digitool.library.mcgill.ca/R/?func=dbin-jump-full&object_id=68217&local_base=GEN01-MCG02	
.Colony.Frame.Fraction	90	%		Areal proportion of colony arms (view vertically)		
.Colony.GrowthRate	7.7	mm/yr		linear extension	http://www.scichina.com:8080/kxtbe/fileup/PDF/09ky0696.pdf	
.Colony.Morphology	attached(surface); globose	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	100	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	100	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	mx=3			Clast/grain size after death/transport/burial	see above	
.Enviro.Limits	sedimentation; excess nutrients	$		Limitations on growth/fecundity/survival		
.Enviro.Prefs		$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	bright	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr	oligotrophic	$		word	cjj	
.Enviro.Prefs.temp	"[20,0;23,100;28,100;32,0]"	"[degC,%]"	20 & 32 values by cjj	"[EnviroParam, Fitness] LineSet"	http://animal-world.com/encyclo/reef/lg_stony/Favites.php	
.Enviro.Prefs.wd	"[0,10;5,100;40,50;50,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"	http://www.springerlink.com/content/k4j4670v4g6k7780/fulltext.pdf	
.Mortality.Longevity	mx=900; mn=10	yr			http://en.wikipedia.org/wiki/Brain_coral; http://www.iucnredlist.org/apps/redlist/details/133516/0	
.Mortality.Rate	11.25	%/yr	15% over 16mo for Favia favus LizardIs	Rate of death; partial mortality also an issue !	herriott: http://www.int-res.com/articles/meps/21/m021p081.pdf	
.Mortality.Type	"disease, bleaching, A_plancki"	$		"Causes of mortality even in optimum conditions (e.g predation, dieback)"		
.Repro.Clone.ProductionRate	1	%/yr		Clones produced per adult per year under normal conditions	cjj	
.Repro.Clone.SuccessRate	6	%	Recuperating from unpredicted low tide	"Successful formation of colonies from clones (e.g., unattached colonies)"	Loya1975=http://www.tau.ac.il/lifesci/departments/zoology/members/loya/documents/10.pdf	
.Repro.Clone.Type		$				
.Repro.Spawn.ProductionRate	20>>25	/1	Successful long-term offspring	"Spawn (eggs,larvae) produced per adult per year"	"Shlesinger++ Hydrobiologia 216/217: 101-108, 1991. for Favia favus"	
.Repro.Spawn.SuccessRate	mn=13;mx=54	#/yr	/m2; On 1.2x1.2m plates; 3 mo collection	Propagules surviving to grow; /m2 instantaneously	http://www.aoml.noaa.gov/general/lib/CREWS/Cleo/St.%20Croix/salt_river77.pdf (diverse corals)	
.Repro.Spawn.Type	larval; brooded; april nhemi	$		The process of reproduction; seasonality		
						
Creature=	Halimeda tuna	5	"Green alga, calcified"	Vroom et al. 2003 Hydrobiologia 501: 149?166.		
.Alternatives						
.Colony.Size	mx=10	cm		linear size		
.Colony.Capacity	mx=224; av=50	#/m2		Observed areal coverages		
.Colony.Frame.Fraction	10	%		Areal proportion of colony arms (view vertically)		
.Colony.GrowthRate	100	%/yr	complete replacement	linear extension	cjj	
.Colony.Morphology	attached(holdfast); articulated frondose	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	10	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	5	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	1	cm		Clast/grain size after death/transport/burial		
.Enviro.Limits		$		Limitations on growth/fecundity/survival		
.Enviro.Prefs	coral reef lagoons; mid-water banks; nutrient flux	$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	euphotic	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr	mesotrophic	$		word	cjj	
.Enviro.Prefs.temp	25>>32	"[degC,%]"		"[EnviroParam, Fitness] LineSet"		
.Enviro.Prefs.wd	"[0,0; 8,1; 20,10; 55,19; 76,15; 121,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"		
.Mortality.Longevity	1	yr				
.Mortality.Rate	mx=100;mn=30	%/yr	actually /284d; orig as #/yr - changed by cjj to %/yr		Vroom et al. 2003 Hydrobiologia 501: 149?166.	
.Mortality.Type	seasonal dieback	$		"Causes of mortality even in optimum conditions (e.g predation, dieback)"	- Clifton 1997 Science	
.Repro.Clone.ProductionRate	2.3+1.7	#/adult	indvidual; instantaneous	Clones produced per adult per year under normal conditions	Vroom et al. 2003 Hydrobiologia 501: 149?166.	
.Repro.Clone.SuccessRate	1	%		"Successful formation of colonies from clones (e.g., unattached colonies)"		
.Repro.Clone.Type		$	with_dieback		- Clifton 1997 Science	
.Repro.Spawn.ProductionRate	600	%/yr	+1x each 2 mo	"Spawn (eggs,larvae) produced per adult per year"		
.Repro.Spawn.SuccessRate	10	%/yr		Propagules surviving to grow; /m2 instantaneously	cjj	
.Repro.Spawn.Type	gametes; holocarpic; summer to early autumn	$		The process of reproduction; seasonality	Vroom et al. 2003 Hydrobiologia 501: 149?166.	
						
Creature=	Lithothamnion corallioides	6	Species=commonly forms rhodoliths		Lithothamnion corallioides Crouan and Crouan (1867).	
.Alternatives						
.Colony.Size	mx=10	cm		linear size	cjj	
.Colony.Capacity	100	%		Observed areal coverages	cjj	
.Colony.Frame.Fraction	90	%		Areal proportion of colony arms (view vertically)	cjj	
.Colony.GrowthRate	0.4	mm/yr	summer	linear extension	http://seagrant.uaf.edu/news/04ASJ/Foster-2001-JPhycol.pdf	
.Colony.Morphology	massive; globular or branched	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	100	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	100	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	mx=10; av=1	cm		Clast/grain size after death/transport/burial		
.Enviro.Limits	lighted	$		Limitations on growth/fecundity/survival		
.Enviro.Prefs		$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	euphotic	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr		"[ppm,%]"		"[EnviroParam, Fitness] LineSet"		
.Enviro.Prefs.temp		"[degC,%]"		"[EnviroParam, Fitness] LineSet"		
.Enviro.Prefs.wd	"[2, 40;5, 20; 7, 100; 18,60; 30,5; 90, 1] "	"[m,%]"		"[EnviroParam, Fitness] LineSet"	http://seagrant.uaf.edu/news/04ASJ/Foster-2001-JPhycol.pdf	
.Mortality.Longevity	mn=100	yr	"? written as "">100"""		http://seagrant.uaf.edu/news/04ASJ/Foster-2001-JPhycol.pdf	
.Mortality.Rate						
.Mortality.Type		$				
.Repro.Clone.ProductionRate	0			Clones produced per adult per year under normal conditions		
.Repro.Clone.SuccessRate	0			"Successful formation of colonies from clones (e.g., unattached colonies)"		
.Repro.Clone.Type	tetrasporangial conceptacles =>asexual	$				
.Repro.Spawn.ProductionRate	1000	#/yr		"Spawn (eggs,larvae) produced per adult per year"	cjj	
.Repro.Spawn.SuccessRate	1	%/yr		Propagules surviving to grow; /m2 instantaneously	cjj	
.Repro.Spawn.Type		$		The process of reproduction; seasonality		
						
Creature=	Porolithon onkodes	7	Encrusting alga of reef ridge tops		=Hydrolithon_onkodes	
.Alternatives						
.Colony.Size	mn=2;mx=20	cm	V only	linear size	Adey: http://si-pddr.si.edu/dspace/bitstream/10088/1113/2/SCMS-0015-Lo_res.pdf	
.Colony.Capacity	mx=60	%	CarryingCapacity	Observed areal coverages		
.Colony.Frame.Fraction	90	%		Areal proportion of colony arms (view vertically)		
.Colony.GrowthRate	3	mm/yr		linear extension		
.Colony.Morphology	massive; encrusting	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	100	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	100	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize				Clast/grain size after death/transport/burial		
.Enviro.Limits	lighted	$		Limitations on growth/fecundity/survival		
.Enviro.Prefs	marine; emergent to submerged	$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	bright	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr		"[ppm,%]"		"[EnviroParam, Fitness] LineSet"		
.Enviro.Prefs.temp	warm	$		word	cjj	
.Enviro.Prefs.wd	"[-1,60; 2,20; 15,20; 25,3; 52,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"	Camoin 2006; Adey: http://si-pddr.si.edu/dspace/bitstream/10088/1113/2/SCMS-0015-Lo_res.pdf	
.Mortality.Longevity						
.Mortality.Rate						
.Mortality.Type		$				
.Repro.Clone.ProductionRate	0			Clones produced per adult per year under normal conditions		
.Repro.Clone.SuccessRate	0			"Successful formation of colonies from clones (e.g., unattached colonies)"		
.Repro.Clone.Type		$				
.Repro.Spawn.ProductionRate	1000	%/yr		"Spawn (eggs,larvae) produced per adult per year"	cjj	
.Repro.Spawn.SuccessRate	1	%		Propagules surviving to grow; %	cjj	
.Repro.Spawn.Type		$		The process of reproduction; seasonality		
						
Creature=	Lophelia pertusa	8	Deep water coral			
.Alternatives						
.Colony.Size	mx=1>>3	m		linear size	http://www.safmc.net/HabitatManagement/DeepwaterCorals/Lophelia/tabid/247/Default.aspx	
.Colony.Capacity	0.05	%		Observed areal coverages		
.Colony.Frame.Fraction	5	%		Areal proportion of colony arms (view vertically)		
.Colony.GrowthRate	10	mm/yr		linear extension	http://en.wikipedia.org/wiki/Deep_water_coral#Growth_and_reproduction	
.Colony.Morphology	thicket; bushy	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	2	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	5	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	mn=1;mx=5	cm		Clast/grain size after death/transport/burial		
.Enviro.Limits		$		Limitations on growth/fecundity/survival		
.Enviro.Prefs	deep water; cold water; eutrophic; aphotic	$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	disphotic	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr	mesotrophic	$		word	cjj	
.Enviro.Prefs.temp	"[0,0;6,100;10,100;15,0]"	"[degC,%]"	0 & 15dg values by cjj	"[EnviroParam, Fitness] LineSet"		
.Enviro.Prefs.wd	"[75,50; 370,50; 500,100; 700,100; 850,0]"	"[m,%]"		"[EnviroParam, Fitness] LineSet"		
.Mortality.Longevity	700	yr	Florida		http://www.safmc.net/HabitatManagement/DeepwaterCorals/Lophelia/tabid/247/Default.aspx	
.Mortality.Rate						
.Mortality.Type	bioeroding sponges	$		"Causes of mortality even in optimum conditions (e.g predation, dieback)"	Gass and Roberts 2010	
.Repro.Clone.ProductionRate	100	%/yr		Clones produced per adult per year under normal conditions		
.Repro.Clone.SuccessRate	50	%		"Successful formation of colonies from clones (e.g., unattached colonies)"	cjj	
.Repro.Clone.Type	breakage	$				
.Repro.Spawn.ProductionRate	mn=144; mx=480	%	#/adult	"Spawn (eggs,larvae) produced per adult per year"	(various deepsea corals) http://www.earth.ox.ac.uk/~samb/Publications_files/Burgess%20%26%20Babcock%202005.pdf	
.Repro.Spawn.SuccessRate	1	#/m2		Successful long-term offspring; Number of planulae surviving to grow; /m2 instantaneously	cjj	
.Repro.Spawn.Type	egg; lecithotropic; sep to oct boreal; jan to feb boreal	$		The process of reproduction; seasonality	http://oceanexplorer.noaa.gov/explorations/09lophelia/background/edu/purpose.html; waller 2005	
						
Creature=	Celleporella hyalina	9	Bryozoa : Cheilostomata)		" (L.),"	
.Alternatives						
.Colony.Size	3	cm		linear size	cjj	
.Colony.Capacity	mn=0;mx=460	#/m2		Observed areal coverages	Kuklinski++ Polar Biol (2006) 29: 652?661	
.Colony.Frame.Fraction	5	%		Areal proportion of colony arms (view vertically)	cjj	
.Colony.GrowthRate	3	mm/yr	not Celleporella	linear extension	Polar Biol (2007) 30:1069?1081	
.Colony.Morphology	thicket; hemispherical	$		Descriptive		
.Colony.Morphology.Bins	[0;100;0;0]	%	% presences of creature's materials	[Presence] Set	cjj	
.Colony.Tissue.Fraction	10	%		Areal fraction (vertical view) of living tissue	cjj	
.Colony.Disintegrated.Fraction	5	%		Fraction volume it will disintegrate to after death/transport/burial	cjj	
.Colony.Disintegrated.Grainsize	0.5	cm		Clast/grain size after death/transport/burial		
.Enviro.Limits		$		Limitations on growth/fecundity/survival		
.Enviro.Prefs	steno marine ; slow flow rate	$		Preferences for growth/fecundity/survival		
.Enviro.Prefs.irrad	upper_euphotic	$		word	cjj	
.Enviro.Prefs.salin	steno	$		word	cjj	
.Enviro.Prefs.nutr	eutrophic	$		word	cjj	
.Enviro.Prefs.temp	"[10,0;15,100;20,0]"	"[degC,%]"		"[EnviroParam, Fitness] LineSet"	"Hughes (10326?10330   PNAS   September 2, 2003   vol. 100   no. 18)"	
.Enviro.Prefs.wd	"[0,50;5,100;40,0]"	"[m,%]"	"Cinctipora elegans,"	"[EnviroParam, Fitness] LineSet"	cjj	
.Mortality.Longevity	4	mo	"enforced in UK,>18 elsewhere"		"J. M. Cancino and R.N. Hughes (J. Exp. Mar. Biol. Ecol., 1987, Vol. 112, pp. 109-130)"	
.Mortality.Rate	70	%/yr			http://www.int-res.com/articles/meps/210/m210p085.pdf	
.Mortality.Type	nudibranch predation	$		"Causes of mortality even in optimum conditions (e.g predation, dieback)"		
.Repro.Clone.ProductionRate	0	%/yr		Clones produced per adult per year under normal conditions		
.Repro.Clone.SuccessRate	0	%		"Successful formation of colonies from clones (e.g., unattached colonies)"		
.Repro.Clone.Type		$				
.Repro.Spawn.ProductionRate	3>>4	#/yr	?? #/adult/3mo; larvae produced per female; f had longevity 3-4mo	"Spawn (eggs,larvae) produced per adult per year"	"J. M. Cancino and R.N. Hughes (J. Exp. Mar. Biol. Ecol., 1987, Vol. 112, pp. 109-130)"	
.Repro.Spawn.SuccessRate	mx=10	%		Propagules surviving to grow; /m2 instantaneously	"Frank Kenneth McKinney, Marjorie Jackson McKinney, ( Facies Volume 29, Number 1, 119-131)"	
.Repro.Spawn.Type	larval; external fertilization; after 91 to 158days	$		The process of reproduction; seasonality	"J. M. Cancino and R.N. Hughes (J. Exp. Mar. Biol. Ecol., 1987, Vol. 112, pp. 109-130)"	
						
ALL_END