#======================================================= #SETUP file for CarboLOT runs: CJJ 9May2011 #======================================================= #Midway Atoll, Hawaiian-Emporer Chain DPotts work area) #Location initializations ------------------------------ prjA=["CHAG","Chagos Archip_LOT_VOLT_MODEL"] #Naming of the model (Only first entry is used) lolaA=[+071.30,-06.20] #Centre point for the model (lon/lat degrees) modlSZa=[20,20] #Size of the gridded map (X,Y rectangular; in gridcells) modlRESN=0.01 #Resolution of each cell (square in lat/lon degrees) showA=[8,10] #The map cell at which run-time screen display is given for debugging sectnA=[8,-1] #The section for drawing graphs and the strat sectn along #Time initializations ---------------------------------- tStart=0 Start datum (years) tStop=100 Run stop time (years) tStep=1 # (years) ie Annual - almost always the case tRept=20 #Step at which reports and maps are generated (years) tCompute=10 #Step at which burst computing cuts in (years) tBurstLen=8 #Max duration of the burst sampling (years) #Stock initializations ---------------------------------- sStart="equal" Startup type code #Choices... "equal","habisuit","random" # and ("pickup:filename" defaults to "equal") #Blank and # lines will be ignored in the parsing #Use tabs to separate data from trailing comments #Note: [,]," will be stripped out - but OK to use for formatting clarity #End---------------------------------------------------- Project location data ============================== project= CHAG;Chagos Archip_LOT_VOLT_MODEL lon/lat= 71.3;-6.2 model dims,resoln= 2020,0.01 Map layout: modlSZa,modlRESN,showA=20;20,0.01,8;10 Map extents: LoLfHtWdA=...71.2;-6.3;0.2;0.2 Interrogate organism KnowledgeBase ==================== #------------------------------------------------------------ Organism 0|phormidium_crosbyanum Covrg [0.032500000000000001, 1.0, 47.337278106500001] ['m:from mm', 'fxn', '#/m2:from %'] Grwth [0.0022499999999999998] ['m/yr:from mm/yr'] Skltl [0.050000000000000003, 0.032500000000000001, '-', 0.90000000000000002] ['fxn', 'm:from mm', '-', 'fxn'] Zones [50.0, 50.0, 0.0, 0.0] ['%', '%', '%', '%'] HabWd '0,50;13,50;19,20;25,0' 'm' HabTemp '25,0;26,50;32,50;33,0' 'degc' HabPar '8.64,0;12.96,50;56.16,50' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.050000000000000003, 2.0] ['OnNull: fxn/yr', 'yr:from yr'] ReprR [[10.0, 0.00020000000000000001], [100.0, 0.029999999999999999]] [['OnNull: #/yr', ' #/day'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 1|porites_lutea Covrg [2.3050000000000002, 0.45000000000000001, 1.0] ['m:from m', 'fxn', '#/m2'] Grwth [0.0089999999999999993] ['m/yr:from mm/yr'] Skltl [1.0, 3.1499999999999999, '-', 0.90000000000000002] ['fxn', 'm:from m', '-', 'fxn'] Zones [0.0, 0.0, 100.0, 0.0] ['%', '%', '%', '%'] HabWd '0,5; 12,8; 13,100; 20,0' 'm' HabTemp '12,0;14,10;27,66;29.6,10;30,0' 'degc' HabPar '0.0,0;21.6,100;43.2,100;86.4,30' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.124, 500.0] ['fxn/yr:from %/yr', 'yr:from yr'] ReprR [[0.050000000000000003, 0.14800000000000002], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 2|acropora_palmata Covrg [0.90000000000000002, 0.5, 0.14249999999999999] ['m:from cm', 'fxn', '#/m2'] Grwth [0.01] ['m/yr:from cm/yr'] Skltl [0.10000000000000001, 0.29999999999999999, '-', 0.90000000000000002] ['fxn', 'm:from cm', '-', 'fxn'] Zones [0.0, 10.0, 30.0, 40.0] ['%', '%', '%', '%'] HabWd '0.5,0; 3,100; 5.0,10; 22,1; 40,0' 'm' HabTemp '0,16;28,63;31.5,37;38,0' 'degc' HabPar '22.68,100' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.28000000000000003, 10.0] ['fxn/yr:from %/yr', 'yr:from yr'] ReprR [[1.0, 0.66000000000000003], [100.0, 0.029999999999999999]] [['fxn/yr:from #/m2', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 3|acropora_cervicornis Covrg [0.40000000000000002, 0.5, 3.2250000000000001] ['m:from cm', 'fxn', '#/m2'] Grwth [0.12] ['m/yr:from cm/yr'] Skltl [0.050000000000000003, 0.040000000000000001, '-', 0.10000000000000001] ['fxn', 'm:from cm', '-', 'fxn'] Zones [0.0, 10.0, 30.0, 40.0] ['%', '%', '%', '%'] HabWd '0,100; 50,80; 20,80; 30,5; 60,0' 'm' HabTemp '13.3,0;20,100;29,100;30.8,50;32,0' 'degc' HabPar '22.68,100' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.23999999999999999, 20.0] ['fxn/yr:from %/yr', 'yr:from yr'] ReprR [[0.059999999999999998, 0.10000000000000001], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' OnNull: fxn'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 4|favia_favus Covrg [0.050000000000000003, 0.90000000000000002, 6.0] ['m:from m', 'fxn', '#/m2'] Grwth [0.0077000000000000002] ['m/yr:from mm/yr'] Skltl [1.0, 0.10000000000000001, '-', 0.90000000000000002] ['fxn', 'm:from m', '-', 'fxn'] Zones [0.0, 0.0, 100.0, 0.0] ['%', '%', '%', '%'] HabWd '0,10;5,100;40,50;50,0' 'm' HabTemp '20,0;23,100;28,100;32,0' 'degc' HabPar '0.0,0;6.48,0;30.24,100;47.52,50' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.1125, 235.0] ['fxn/yr:from %/yr', 'yr:from yr'] ReprR [[0.01, 0.059999999999999998], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 5|halimeda_tuna Covrg [0.050000000000000003, 0.10000000000000001, 81.0] ['m:from cm', 'fxn', '#/m2'] Grwth [0.050000000000000003] ['m/yr'] Skltl [0.050000000000000003, 0.01, '-', 0.10000000000000001] ['fxn', 'm:from cm', '-', 'fxn'] Zones [0.0, 0.0, 100.0, 0.0] ['%', '%', '%', '%'] HabWd '0,0; 8,1; 20,10; 55,19; 76,15; 121,0' 'm' HabTemp '28,100' 'degc' HabPar '0.0,0;4.32,50;34.56,100;69.12,66' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.55000000000000004, 1.0] ['fxn/yr:from %/yr', 'yr:from yr'] ReprR [[4.0, 0.01], [100.0, 0.029999999999999999]] [['fxn/yr:from #/adult', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 6|lithothamnion_corallioides Covrg [0.050000000000000003, 1.0, 400.0] ['m:from cm', 'fxn', '#/m2:from %'] Grwth [0.00040000000000000002] ['m/yr:from mm/yr'] Skltl [1.0, 0.029999999999999999, '-', 0.90000000000000002] ['fxn', 'm:from cm', '-', 'fxn'] Zones [0.0, 100.0, 0.0, 0.0] ['%', '%', '%', '%'] HabWd '2, 40;5, 20; 7, 100; 18,60; 30,5; 90, 1' 'm' HabTemp '5,0;10,75;20,100;25,66' 'degc' HabPar '0.0,0;0.864,50;4.32,100;6.48,90;14.3856,80' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.050000000000000003, 200.0] ['OnNull: fxn/yr', 'yr:from yr'] ReprR [[0.0, 0.0], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 7|hydrolithon_onkodes Covrg [0.070000000000000007, 1.0, 61.224489795899999] ['m:from cm', 'fxn', '#/m2:from %'] Grwth [0.0030000000000000001] ['m/yr:from mm/yr'] Skltl [1.0, 0.050000000000000003, '-', 0.90000000000000002] ['fxn', 'OnNull: m', '-', 'fxn'] Zones [0.0, 100.0, 0.0, 0.0] ['%', '%', '%', '%'] HabWd '-1,60; 2,20; 15,20; 25,3; 52,0' 'm' HabTemp '29,100' 'degc' HabPar '0.432,0;8.64,100;25.92,100;86.4,30' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.050000000000000003, 1.3999999999999999] ['OnNull: fxn/yr', 'OnNull: yr'] ReprR [[0.0, 0.0], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 8|lophelia_pertusa Covrg [1.75, 0.050000000000000003, 0.00032653061224499998] ['m:from m', 'fxn', '#/m2:from %'] Grwth [0.01] ['m/yr:from mm/yr'] Skltl [0.050000000000000003, 0.022499999999999999, '-', 0.10000000000000001] ['fxn', 'm:from cm', '-', 'fxn'] Zones [0.0, 0.0, 50.0, 50.0] ['%', '%', '%', '%'] HabWd '35,0;75,10; 370,50; 500,100; 700,100; 850,50;3000,0' 'm' HabTemp '4,0;6,100;10,100;12,0' 'degc' HabPar '0,-99' 'mol_photons/m2/d' MortR [0.050000000000000003, 700.0] ['OnNull: fxn/yr', 'yr:from yr'] ReprR [[0.0, 0.0], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 9|celleporella_hyalina Covrg [0.029999999999999999, 0.050000000000000003, 115.0] ['m:from cm', 'fxn', '#/m2'] Grwth [0.0030000000000000001] ['m/yr:from mm/yr'] Skltl [0.050000000000000003, 0.0050000000000000001, '-', 0.10000000000000001] ['fxn', 'm:from cm', '-', 'fxn'] Zones [0.0, 100.0, 0.0, 0.0] ['%', '%', '%', '%'] HabWd '0,50;5,100;40,0' 'm' HabTemp '5,0;7,50;15,100;20,0' 'degc' HabPar '0,-99' 'mol_photons/m2/d' MortR [0.69999999999999996, 0.33200000000000002] ['fxn/yr:from %/yr', 'yr:from mo'] ReprR [[0.0, 0.0], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #------------------------------------------------------------ Organism 10|marginopora_vertebralis Covrg [0.019, 1.0, 1000.0] ['m:from cm', 'fxn', '#/m2'] Grwth [3.2580249999999998e-07] ['m/yr:from %wt/yr'] Skltl [1.0, 0.055500000000000001, '-', 1.0] ['fxn', 'm:from cm', '-', 'fxn'] Zones [0.0, 100.0, 0.0, 0.0] ['%', '%', '%', '%'] HabWd '0,0; 10,100; 20,50; 50,0' 'm' HabTemp '21,0;27,100;33,0' 'degc' HabPar '0.0,0;4.32,50;8.64,100;64.8,100' 'mol_photons/m2/d:from umol_photons/m2/s' MortR [0.080000000000000002, 3.5] ['fxn/yr:from %/yr', 'yrs'] ReprR [[0.0, 0.0], [100.0, 0.029999999999999999]] [['fxn/yr:from %/yr', ' fxn/yr:from %'], ['#/yr', 'fxn/#/m2']]| #ChagosBank CarboLOT project Events definitions #Version: 21June2011 CJJ # #event_type return_period_yr mortality_/1 players_dying_[] spawning_/1 players_spawning_[] time_series_URL #bleaching 12 0.3 [1,2,3,5] 0.0 [] - cots 22 0.5 [1,3,5] 0.0 [] - #cyclone 14 0.1 [1,3,4,5] 0.1 [2] - disease 15 0.2 [2] 0.0 [] - #sedimentation 2 0.1 [3,4,5,6] 0 [] - influx 9 0 [] 0.01 [2,3,4,5] - Elapsed times: setupClock,runClock,finishClock,tAdvantage=0.41001376473802309|12.0315538604161|0.17729552733244797| mins ( x4371505 advantage)